RnoEX0029078 @ rn6
Exon Skipping
Gene
ENSRNOG00000026490 | Dnm3
Description
dynamin 3 [Source:RGD Symbol;Acc:727949]
Coordinates
chr13:79936418-80043607:-
Coord C1 exon
chr13:80043498-80043607
Coord A exon
chr13:79999922-80000033
Coord C2 exon
chr13:79936418-79936582
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTTTAAACTCTAGGAA
3' ss Score
10.49
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GAGAAAGAAAAGAAGTATATGCTTCCACTGGACAACCTGAAAGTCCGGGACGTGGAGAAAGGCTTCATGTCCAGCAAGCACGTCTTCGCACTCTTCAACACAGAACAAAG
Seq A exon
GAATGTCTACAAAGACTATCGTTCCCTGGAGCTGGCCTGTGATTCCCAGGAGGATGTGGACAGCTGGAAGGCGTCTCTGCTCAGAGCTGGCGTCTATCCAGACAAGTCTTTT
Seq C2 exon
ACTGAAAATGATGAAAATGGACAAGCAGAAAACTTCTCCATGGACCCGCAGTTGGAGAGGCAAGTGGAGACTATTCGCAACCTCGTAGACTCCTACATGTCGATAATCAACAAATGCATCCGAGACCTAATTCCAAAAACAATAATGCACCTTATGATCAATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026490-'36-31,'36-29,39-31
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.285
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(34.6=100)
A:
PF0016924=PH=PD(27.9=76.3)
C2:
PF0221213=GED=PU(41.3=69.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTTCCACTGGACAACCTG
R:
TCATAAGGTGCATTATTGTTTTTGGA
Band lengths:
249-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]