GgaEX1020501 @ galGal4
Exon Skipping
Gene
ENSGALG00000003164 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr8:4536786-4576825:-
Coord C1 exon
chr8:4576716-4576825
Coord A exon
chr8:4566199-4566310
Coord C2 exon
chr8:4536786-4536950
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGTGGTGCTCTTTGTTCTAGGAA
3' ss Score
11.78
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GAGAAAGAGAAGAAGTACATGCTTCCTCTGGACAACTTGAAAGTGCGTGATGTTGAAAAGAGCTTCATGTCCAGCAAACATATCTTTGCATTGTTTAACACGGAGCAGAG
Seq A exon
GAATGTTTACAAGGATTACCGTTTCCTTGAACTAGCCTGTGACTCCCAAGAGGAGGTGGATAGCTGGAAGGCATCTCTGCTACGAGCCGGTGTCTATCCTGATAAATCCTCA
Seq C2 exon
ACGGAAAATGATGAGAATGGCCAAGCGGACAATTTTTCAATGGACCCCCAATTGGAGAGACAGGTGGAGACGATTCGAAATCTGGTGGACTCCTACATGTCTATTATCAACAAATGTATCCGAGACTTGATACCGAAAACAATCATGCACCTTATGATCAATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.079 C2=0.309
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(34.6=100)
A:
PF0016924=PH=PD(27.9=76.3)
C2:
PF0221213=GED=PU(41.3=69.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCTTCCTCTGGACAACT
R:
AGGTGCATGATTGTTTTCGGT
Band lengths:
246-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]