DreEX0028175 @ danRer10
Exon Skipping
Gene
ENSDARG00000062083 | dph7
Description
diphthamide biosynthesis 7 [Source:ZFIN;Acc:ZDB-GENE-070410-57]
Coordinates
chr5:24573412-24576486:-
Coord C1 exon
chr5:24576421-24576486
Coord A exon
chr5:24575850-24576022
Coord C2 exon
chr5:24573412-24574018
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATAATGTCCCTGTTTTGCAGCTA
3' ss Score
8.91
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GCACACTATGGGGGTTTGCAGCATACACAGTAACCCTCATCGAGAGCACATACTGGCCACAGGAAG
Seq A exon
CTATGATGAGAATGTGTTGCTGTGGGATGGGAGAAACATGAAGCAGCCCCTGAGTGAGACTGCTGTGGGTGGAGGAGTGTGGAGACTCAAGTGGCACCCCAGTCAAGAGCACCTGCTGCTTGCTGCATGCATGCATAATGACTTCCAGATTCTATACTGCCAGAAAGCTTTGG
Seq C2 exon
AAGGACAAGAGACACCATGTCCAGTTCTAGGGTCCTATATTCTTCACAACTCTTTAGCATATGGAGCAGACTGGTCCAGACTCCCTGTGAGCTCCTCTGCACCCCCCTCTCCTCAAGAACCTCCACAAACCAGCTCAGGGCTCGTCGAGTCCACAGGTCACCTCAGGATCCAGTATGAATCACCCACTGCCAGCTTCGACACATCTCTAGAGGATGACTCCGGTCGCTACATACCTGACCAGTGTCCTTCACCAGAAAAGAGCTCAGTTTCAGACCTGTTCACCAGCGATGCCCGGGACTCTGTGTCCTGTCTGATAGCCACCTGCTCCTTCTACGACCACATGATGCATGTGTGGCGGTGGGATTGGAGCCCAGAGGAAAAACACGAAAGCCTATAAAAATGAGCTTGTTTGGAGCTGCACATTCAGGTGACTGAAGCATTGCTTTGTATTTAATGTATGCAATATTGCTTTATTCCTGTCATTTGCTGACTATATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062083-'8-16,'8-13,9-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.295
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(55.0=100)
A:
PF0040027=WD40=PD(22.5=15.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTATGGGGGTTTGCAGCAT
R:
GCTGGCAGTGGGTGATTCATA
Band lengths:
257-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]