MmuEX0052066 @ mm10
Exon Skipping
Gene
ENSMUSG00000026975 | Dph7
Description
diphthamine biosynethesis 7 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24969050-24972163:+
Coord C1 exon
chr2:24969050-24969115
Coord A exon
chr2:24969506-24969678
Coord C2 exon
chr2:24971523-24972163
Length
173 bp
Sequences
Splice sites
3' ss Seq
CAATGCTTGGATGGTTCCAGCTA
3' ss Score
2.3
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACATTGCATGGGTGTGTGCAGCATCCAGAGCAGCCCCCATCAGGAGCATATACTGGCAACTGGAAG
Seq A exon
CTATGATGAGCATGTTCTGCTGTGGGACACTCGAAACATAAGACAGCCATTGGCGGATGTACCAGTGCAAGGAGGTGTGTGGAGGCTCAAGTGGCACCCAGTTCACCACCATCTACTCCTGGCGGCCTGCATGCACAATGGCTTCAAGATTCTCAACTGCCAGAAGGCCATTG
Seq C2 exon
AGGAGAAGCAGGACATAACTGTTTTAACATCCCACGAAATGCCTAACTCATTAGTATATGGGGCTGACTGGTCCTGGCTTTTCCATTCCATGAAGCCCACTCCTACCTGGTTCTTTGATCAGAATGACATGGGAGTCAAAGCAGCAGACCACTCTAGCCTAAAGGTCACAGAGGAGCCACCAATACATTCTCAGGAACAAACCATGGATCGCCAAGTGGAAGGCCCCGCTAACGCTCATACCAGAGCTGAACTGAAGGCTTCTCTCCTTCCATTAACAGAGGACATGAAAAACAGCAAAGACTGCTCCTCATCCTCAGTCAAGACTCGTGATCTTAGCCACTGCTCTGGTGGGCAGAGCTTTGACAATAGCCTCCTGGCCACCTGCTCCTTTTATGACCATGTTCTCCACCTTTGGAAGTGGGAGACGAATCAAGCTCGCACTCTTTGCAGTGGCACTGGATGTGATTTGGGGAGTGCTGACCATTGAGAATGGACTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975-'12-18,'12-15,14-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.235
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(55.0=100)
A:
PF0040027=WD40=PD(22.5=15.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCCCATCAGGAGCATAT
R:
GGCGATCCATGGTTTGTTCCT
Band lengths:
249-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types