GgaEX1020867 @ galGal3
Exon Skipping
Gene
ENSGALG00000008750 | WDR85
Description
NA
Coordinates
chr17:1977653-1979751:+
Coord C1 exon
chr17:1977653-1977718
Coord A exon
chr17:1977918-1978090
Coord C2 exon
chr17:1979654-1979751
Length
173 bp
Sequences
Splice sites
3' ss Seq
GATCTGTGATACATCTCCAGCTA
3' ss Score
4.71
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ACACTCAATGGGTGTATGCAGCATTCAGTGTAGTCCCCACCGGGAGAACCTCCTGGCTACTGGCAG
Seq A exon
CTATGATGAGCATGTGCTGCTGTGGGACACCAGGAACATGAAGCAGCCGCTGGCAGACACCCATGTTGAAGGTGGAGTCTGGAGGTTGAAGTGGCACCCAACCTGTGATTTTGTGCTGTTAGCAGCCTGCATGCAGAGTGGATTCAAGATCCTTGACTGCCGTGGAAGCATGG
Seq C2 exon
CTGAAAACACGGAGGAATGTGTCATCCTGTCATCCTATGTCTTGCACAATTCTCTGGCCTATGGGGCTGACTGGTCAAGGCTGTGCCCGAGGGATTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008750-'4-9,'4-8,5-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(55.0=100)
A:
PF0040027=WD40=PD(22.5=15.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCAATGGGTGTATGCAGCA
R:
GAATCCCTCGGGCACAGC
Band lengths:
162-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]