HsaEX6064332 @ hg38
Exon Skipping
Gene
ENSG00000148399 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr9:137554904-137565154:-
Coord C1 exon
chr9:137564893-137565154
Coord A exon
chr9:137564434-137564606
Coord C2 exon
chr9:137554904-137555648
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTGTGGTTGGTCGGTTTCAGCTA
3' ss Score
6.97
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGGGCGACGATGGCCTTCTGAGGGGCTGGGACACCAGGGTACCCGGCAAATTTCTCTTCACCAGCAAAAGGTAACTGCCCAAGGGCCAGCACTCGGTGCCCACACCAGCCCCCGCGTTCCCTGGGTCACCAGCCCTCCCGTTCCCTGGGTGGGTCTGTGTGCTGGACACTGGTTCAGAAGCCGCCTCTGCTTGCAGACACACCATGGGTGTGTGCAGCATCCAGAGCAGCCCTCATCGGGAGCACATCCTGGCCACGGGAAG
Seq A exon
CTATGATGAACACATCCTACTGTGGGACACACGAAACATGAAGCAGCCGTTGGCAGATACGCCTGTGCAGGGTGGGGTATGGAGAATCAAGTGGCACCCTTTCCACCACCACCTGCTCCTGGCCGCCTGCATGCACAGTGGCTTTAAGATCCTCAACTGCCAAAAGGCAATGG
Seq C2 exon
AGGAGAGGCAGGAGGCGACGGTCCTGACATCTCACACATTGCCCGACTCGCTGGTGTATGGAGCCGACTGGTCCTGGCTGCTCTTCCGTTCTCTGCAGCGGGCCCCCTCGTGGTCCTTTCCTAGCAACCTAGGAACCAAGACGGCAGACCTGAAGGGTGCAAGCGAGTTGCCAACACCCTGTCATGAATGCAGAGAGGATAACGATGGGGAGGGCCATGCCAGACCCCAGAGTGGAATGAAGCCACTCACAGAGGGCATGAGGAAGAATGGCACCTGGCTGCAGGCTACAGCAGCCACCACACGTGACTGTGGCGTGAACCCAGAAGAAGCAGACTCAGCCTTCAGCCTCCTGGCCACCTGCTCCTTCTATGACCATGCGCTCCACCTCTGGGAGTGGGAGGGGAACTGAGCTTGAAATCATGAAGCCCCTTCCCACAAGGAAACCAGGAGGGAGACTGCGAGTGAGTGCCCGGGACCACCTCATCAGAGATGCTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148399-'17-27,'17-18,21-27=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.368
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(55.0=100)
A:
PF0040027=WD40=PD(22.5=15.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACTGGTTCAGAAGCCG
R:
CCGTCTTGGTTCCTAGGTTGC
Band lengths:
243-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains