RnoEX0029603 @ rn6
Exon Skipping
Gene
ENSRNOG00000008102 | Dph7
Description
diphthamide biosynthesis 7 [Source:RGD Symbol;Acc:1304868]
Coordinates
chr3:2176546-2178956:+
Coord C1 exon
chr3:2176546-2176611
Coord A exon
chr3:2176974-2177146
Coord C2 exon
chr3:2178514-2178956
Length
173 bp
Sequences
Splice sites
3' ss Seq
CAGTGATCGGATGTTTCCAGCTA
3' ss Score
1.31
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
ACACTCCATGGGCGTGTGCAGCATCCAGAGCAGCCCCCATCGGGAGCACATCCTGGCTACCGGAAG
Seq A exon
CTATGATGAGCATGTTCTGCTGTGGGACACTCGGAATGTAAGACAACCGTTGGCAGATGTGCCAGTGCAAGGAGGCGTGTGGCGGCTCAGGTGGCACCCGGTCCACCACCATCTACTCCTGGCGGCCTGCATGCACAACGGCTTCAAGATCCTCAACTGCCAGAAGGCCATCG
Seq C2 exon
AGGAGAAGCAGGACATAACTGTTCTAACCTCCCACACGATGCCTAACTCATTAGTGTATGGGGCTGACTGGTCCTGGCTTCTTTTCCACTCCGTGAAGTCCACACCTGCCTGGTCCTTGGATCAAAATGACGTGGGAGTCAAAGCAGCAGACCACGATAGCCTGAAGGCTGCACAGCAGCTGCCAGCCCCTTCTCAGGAGCACACAGTGGATCACCACGGGGAAGGCCCTGCGAGAGCTCACAGCAGAGCGGAACTGAAGGATCCTCTGCTTCCACTAACAGAGGACAGGAAGAGCAACAGCAAAGGATCCTGCTCACCCTCAGTCAAGAGGAGTGGTCTTAGCCGCCGCCCTAGTGGACACAACTTTGACAGCAGCCTCCTGGCCACCTGCTCCTTTTATGACCATGTTCTCCACCTTTGGAAGTTGGAGACAAAGCAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008102-'9-16,'9-12,11-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.480
Domain overlap (PFAM):
C1:
PF0040027=WD40=FE(55.0=100)
A:
PF0040027=WD40=PD(22.5=15.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGAGCAGCCCCCATC
R:
TCCACTGTGTGCTCCTGAGAA
Band lengths:
255-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]