DreEX0028378 @ danRer10
Exon Skipping
Gene
ENSDARG00000024865 | dscama
Description
Down syndrome cell adhesion molecule a [Source:ZFIN;Acc:ZDB-GENE-050310-7]
Coordinates
chr10:38831870-38874770:+
Coord C1 exon
chr10:38831870-38832594
Coord A exon
chr10:38869982-38870299
Coord C2 exon
chr10:38874624-38874770
Length
318 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTCTCTCTCCGCAGTTC
3' ss Score
13.65
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CCGTCATCTCGAACCCTCCGCCGCGTGCGCACTGGACTTCCGCAGCCCCCATTTTTTCTTTTTCATTTCTTTTTTCCTTTCGTTTTCTTATTTATTCTCTCTCTCTCTTATTTCCGTAAACTTTCCGCCTCATTAATTATTCAGTGGATTTACTTTGCCGCGGTGGTTTAAGACTACACCTGTGCGCAGTGGCCCCAGTAAGCTCCGCTCCGCGCGCGCGCTCTGACTCAGCACCGCACCGCACCTGGACGCGTCTCCTGCCGCCTCGCCTCGCCTCTCCTCTCCTGCTGGAGCTGCAGCCCGGAGACCATCAGCCCGGAGCCCCGCAAGCGACAGCCCTACTGGAACTACTAATTACGCACACATCCACACATTGCAGCGCGACGGCTCGTTCTGGAGGAAAAGTGCGCGGTGGGCAAAAGACAAATCTTAGTTTGGAGATTGAAAGGAGCGGGGCATGTGGATATTGGCCATCATCTTTTTCCAGTGCATTTTGAATG
Seq A exon
TTCTCAGTGAAGACCTACATTCCAGCTTGTATTTTGTCAATGCATCTCTGCAAGAGGTAGTGTTCGCCAGCACCACGGGGACTCTGGTTCCCTGTCCTGCAGCAGCGGTGCCGCCTGCTACCCTGCGCTGGTATCTGGCCACCGGCGAGGAGAGCTACAACGTCCCAGGGATCCGCCATGTCCACCCCAACGGCACTCTCCAGATCTTCCACTTTCCTCCGTCCAGCTTTAGCAAAGTGATCCACGACAACACTTACTATTGCACAGCGGAAAATCCTTCAGGGAAAATTAGAAGCCAAGATGTTCATATTAAGGCCG
Seq C2 exon
TCTTACGGGAGCCCTATACGGTCCGTGTGGCGGACCAGACCGCGATGAGAGGCAGCGTAGCGGTCTTCAAGTGCATTATTCCTTCCTCAGTGGAAAACTACATCACTGTTGTGTCATGGGAGAGAGACACCGTACCACTCGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024865-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF139271=Ig_3=WD(100=74.8),PF138951=Ig_2=PU(2.0=1.9)
C2:
PF138951=Ig_2=FE(49.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGACTACACCTGTGCGCAG
R:
ACCGTATAGGGCTCCCGTAAG
Band lengths:
354-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]