HsaEX6006203 @ hg38
Exon Skipping
Gene
ENSG00000171587 | DSCAM
Description
DS cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr21:40692810-40818648:-
Coord C1 exon
chr21:40818548-40818648
Coord A exon
chr21:40708454-40708771
Coord C2 exon
chr21:40692810-40692956
Length
318 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTTGTCTTCTTGCAGTTT
3' ss Score
10.83
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTTAACGTTGGCTTTCCAAGAGCAAATGCTCAAGCGTGGGATAACTATCTTATGTGACTTTGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq A exon
TTTTCAGTGAAGACCTACACTCCAGCCTCTACTTTGTCAATGCATCTCTGCAAGAGGTAGTGTTTGCCAGCACCACGGGGACTCTGGTGCCCTGCCCCGCAGCAGGCATCCCTCCTGTGACTCTCAGATGGTACCTAGCCACGGGCGAGGAGATCTACGATGTCCCCGGGATCCGCCACGTCCACCCCAACGGCACTCTCCAAATTTTCCCCTTCCCTCCTTCAAGCTTCAGTACCTTAATCCATGATAATACTTATTATTGCACAGCTGAAAATCCTTCAGGGAAAATTAGAAGTCAGGATGTCCACATCAAGGCTG
Seq C2 exon
TTTTACGGGAGCCCTATACAGTCCGTGTGGAGGACCAGAAAACCATGAGAGGCAATGTTGCGGTCTTCAAGTGCATTATCCCCTCCTCGGTGGAGGCGTACATCACTGTCGTCTCATGGGAGAAAGACACTGTTTCACTTGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171587-'6-5,'6-1,15-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF138951=Ig_2=WD(100=89.7),PF138951=Ig_2=PU(2.0=1.9)
C2:
PF138951=Ig_2=PD(0.1=0.0),PF138951=Ig_2=FE(49.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTTCCAAGAGCAAATGC
R:
CTGAGACAAGTGAAACAGTGTCT
Band lengths:
240-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains