RnoEX6056706 @ rn6
Exon Skipping
Gene
ENSRNOG00000061472 | AABR07033720.1
Description
NA
Coordinates
chr11:37458731-37599408:-
Coord C1 exon
chr11:37599348-37599408
Coord A exon
chr11:37474938-37475255
Coord C2 exon
chr11:37458731-37459845
Length
318 bp
Sequences
Splice sites
3' ss Seq
GTCTGTGTTGTCTCTTGCAGTTT
3' ss Score
11.82
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CCGGGCAGCAGCAGGGGCATGTGGATACTGGCTCTCTCCTTGTTCCAGAGCTTCGCGAATG
Seq A exon
TTTTCAGTGAAGAGCCCCACTCCAGCCTCTACTTTGTCAATGCATCGCTGCAAGAGGTAGTGTTTGCAAGCACGTCGGGGACCCTGGTGCCCTGCCCGGCTGCAGGCATCCCTCCTGTGACTCTCAGATGGTACCTAGCAACGGGCGAGGAGATCTACGATGTCCCTGGGATCCGCCACGTCCATCCCAATGGCACTCTCCAAATTTTCCCCTTTCCTCCTTCAAGCTTCAGCACCTTAATCCATGATAATACTTACTATTGCACAGCTGAAAACCCTTCAGGGAAAATTAGAAGTCAGGATGTCCACATCAAGGCTG
Seq C2 exon
TTTTACGGGAGCCCTATACAGTCCGTGTGGAGGACCAGAAAACCATGAGAGGCAATGTCGCGGTGTTCAAGTGCATTATCCCCTCCTCGGTGGAGGCGTACGTCACTGTCGTCTCATGGGAGAAAGACACGGTTTCACTTGTCTCAGGTAGGCTGAGCGCCACAACACAGGGCTGCTTGGAGGTAGGAATGGGCCTCCCCTTCTGTGTGATATAAGGAAGGACACCTGGGGTGATTTTATCAAAGACTGAGCTTACCTTGGTTGACTCTATATTACAAATACGTGTGGTGGCATGCCTATGGTGTGGTCACCATACCTGACGGTGTATAGTGGTCCCATTCCACACTCATTGAAGAGTTGACTGATGAAGGGATGTTAGTCACATGTGACATGGACATAGCCACAACTTGTATGGAAACTTGAGGTTTTATTTCTGCATTCAAAAGCAGGTAAGTTGAATACTGTGTCCCTGGGGCACTTCATTGATGCACAGTGTGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061472-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTTCCAGAGCTTCGCGAA
R:
CGTCAGGTATGGTGACCACAC
Band lengths:
345-663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]