MmuEX6063636 @ mm9
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:97260505-97392359:-
Coord C1 exon
chr16:97391841-97392359
Coord A exon
chr16:97278055-97278372
Coord C2 exon
chr16:97260505-97260651
Length
318 bp
Sequences
Splice sites
3' ss Seq
GTCTGTGTTGTCTCTTGCAGTTT
3' ss Score
11.82
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGCAGGGAAGGGCAGCACAGGGGACCCGGCGCCCGAGGCCGCCGCAGCAGGATGAGCCTGGCCGCGCGCCTGCTGCCTGGCTGCGGAGGGTGAGGCCGGCGCCCGGGAGGCCGCCGCCTGGCCGCGCTGCGCATCGGGGGGCGCCCGGCATGAGCTCGCGCCCGCGGCTGCGGCTGTGCGCCCGCGCCTGGCTGCCCGCGGCCCGCTGAGCCGAGCCGAGCGCACGGCGCACCTGGGCTGTGTCCGCGGCGCGGGGCGCGGCGCCCGGGAGCAGGTGTGCGGGGGCGCAGCAAGCGGGGAGCGCGGCTGGGCGGCTGGGCGGCCCCCGGGCAGGTGGCGGGCAGCAAGCGGAGCCGGGCCGGGCGCGGCGGAGCGCAGCGCAGCGCGGGGGGCGAGGCCGGCGCGTGGCTCGCTCGCTGGCTCGCTGGCTCGCGGGAGGCCGGGCAGCAGCAGGGGCATGTGGATACTGGCTCTCTCCTTGTTCCAGAGCTTCGCGAATG
Seq A exon
TTTTCAGTGAAGAGCCCCACTCCAGCCTCTACTTTGTCAATGCATCGCTGCAAGAGGTAGTGTTTGCAAGCACATCGGGGACGCTGGTGCCCTGCCCGGCTGCAGGCATCCCTCCTGTGACTCTCAGATGGTACCTAGCAACGGGCGAGGAGATCTACGATGTCCCCGGGATCCGCCACGTCCATCCCAATGGCACTCTCCAAATTTTCCCCTTTCCTCCTTCAAGCTTCAGCACCTTAATCCATGATAATACTTACTATTGCACAGCTGAAAACCCTTCAGGGAAAATTAGAAGTCAGGATGTCCACATCAAGGCTG
Seq C2 exon
TTTTACGGGAGCCCTATACAGTCCGTGTGGAGGACCAGAAAACCATGAGAGGCAATGTCGCGGTGTTCAAGTGCATTATCCCCTCCTCGGTGGAGGCGTACGTCACTGTCGTCTCATGGGAGAAAGACACGGTTTCACTTGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'0-1,'0-0,2-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF139271=Ig_3=WD(100=74.8),PF138951=Ig_2=PU(2.0=1.9)
C2:
PF138951=Ig_2=FE(49.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGCGGAGGGTGAG
R:
ACTGTATAGGGCTCCCGTAAA
Band lengths:
446-764
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: