HsaEX6006203 @ hg19
Exon Skipping
Gene
ENSG00000171587 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:3039]
Coordinates
chr21:42064736-42219065:-
Coord C1 exon
chr21:42218545-42219065
Coord A exon
chr21:42080380-42080697
Coord C2 exon
chr21:42064736-42064882
Length
318 bp
Sequences
Splice sites
3' ss Seq
CCTGTGTTGTCTTCTTGCAGTTT
3' ss Score
10.83
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CCATGTGACTGAGGCCGGAGCACGGCAAAGATGAGCCTGCCCGCCCGCCTGCTGCCTGGATGCGGAGGGTGAGGGCTGGCGCACGGGAGGCCGCTGGCTGCGCATTCTGGGCGCCGAGTGCCCGGGATGAGCTCACGCCCGCGTCTGCGGCTCTCTCCACCTGCCGACCTGCCGGGGGCCCACTGAGCTGACGGCGCACCTGGGCTCCGGCCGCAGCGTGGGGCGCGGCGCCCGGGAGCAGGTGTGCAGGAGCGCAGCGCGCGGCGAGCGCAGCCCTCGCTCCGGAGCCCGGCCGCGCCGCGTGCCCGGGCGGCTAGGCAGCGGCGGCGGCGGCGGCGGGCGGCGGGCGGGCGGCGGCCCCCGGGCAGGTGCCGAGCGGCGAGCGGAGCCGGGCCGGGCGGAGCGCGGGGGGCGAGGCCGGCGCGTCGCTCGCGGGAGGCCGGGGAGCGGCAGGGGCATGTGGATACTGGCTCTCTCCTTGTTCCAGAGCTTCGCGAATG
Seq A exon
TTTTCAGTGAAGACCTACACTCCAGCCTCTACTTTGTCAATGCATCTCTGCAAGAGGTAGTGTTTGCCAGCACCACGGGGACTCTGGTGCCCTGCCCCGCAGCAGGCATCCCTCCTGTGACTCTCAGATGGTACCTAGCCACGGGCGAGGAGATCTACGATGTCCCCGGGATCCGCCACGTCCACCCCAACGGCACTCTCCAAATTTTCCCCTTCCCTCCTTCAAGCTTCAGTACCTTAATCCATGATAATACTTATTATTGCACAGCTGAAAATCCTTCAGGGAAAATTAGAAGTCAGGATGTCCACATCAAGGCTG
Seq C2 exon
TTTTACGGGAGCCCTATACAGTCCGTGTGGAGGACCAGAAAACCATGAGAGGCAATGTTGCGGTCTTCAAGTGCATTATCCCCTCCTCGGTGGAGGCGTACATCACTGTCGTCTCATGGGAGAAAGACACTGTTTCACTTGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171587-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF138951=Ig_2=WD(100=89.7),PF138951=Ig_2=PU(2.0=1.9)
C2:
PF138951=Ig_2=PD(0.1=0.0),PF138951=Ig_2=FE(49.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCCCACTGAGCTGAC
R:
ACACGGACTGTATAGGGCTCC
Band lengths:
354-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)