DreEX0029744 @ danRer10
Exon Skipping
Gene
ENSDARG00000053864 | elmsan1b
Description
ELM2 and Myb/SANT-like domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-131121-13]
Coordinates
chr17:37382409-37395435:+
Coord C1 exon
chr17:37382409-37382551
Coord A exon
chr17:37385879-37385982
Coord C2 exon
chr17:37395360-37395435
Length
104 bp
Sequences
Splice sites
3' ss Seq
ATTCAGTGTTTTCATTGCAGTGA
3' ss Score
5.54
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TCGGATAAACATTGGAGTGCGGTATCAAGCGGAGGTCCCCGAGCTGAGAGAGCGATCGGCAGCGCTGCACGACCTACACAAGGCTGAACTGGTGTGGGCGCCACTGCCTGACCTAGAGGCCAGTGCTCAGCAACAGCAAAAAG
Seq A exon
TGAATGACCTCATGCACCTGGCCTGTTCAAGTGCGTTATTCGGAGGAGGGACCAATCAGGAGCTGGCCATGCACTGCCTGTATGAGTGCAAGGGTGACATCATG
Seq C2 exon
GGAACCCTCACACATCTGCTATTAAAAAAAAACATCTTTTCCAAATCGCACCCTCTGGCTGACTACCACTACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053864_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=0.000 C2=0.058
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PU(79.3=93.9)
A:
PF0144819=ELM2=PD(19.0=31.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGATAAACATTGGAGTGCGG
R:
CAGAGTAGTGGTAGTCAGCCAGA
Band lengths:
219-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]