DreEX0030267 @ danRer10
Exon Skipping
Gene
ENSDARG00000007485 | epc2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-802]
Coordinates
chr9:25538925-25540915:-
Coord C1 exon
chr9:25540794-25540915
Coord A exon
chr9:25539486-25539594
Coord C2 exon
chr9:25538925-25539207
Length
109 bp
Sequences
Splice sites
3' ss Seq
CCCCTGTGTGTTTGTCTTAGACT
3' ss Score
9.79
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GTGGATTCACAGAAGAGCAGTTTCAGTCCCATCAGCAGCAGCTGGTTCACATGCACAAACAGTTACAGCAGCAAGAACTGCAGCAGAACTCCACAGCAGCAGAAGCTCACTTACACCTGCAT
Seq A exon
ACTCTGGACTCGGCTGGTGCTCATTTTGCTGCCTCTGCTGTGATCAACACTCCCAACAATGAAAACAGACCCCAGATTGCTAGTGTCAATGGCGTCCTTCCCAATTCAG
Seq C2 exon
GAAGCTTCAGACAAGTCAAAGTGAACCGTTCAGCTCCGAGTGGAGGTGGTGGTGCTGGTGGTGAATTAGGCTCTTTAGTGCGGAGTCCACAGCTGGCCGTCCCTCAGTCTCTGCCCCACGGACACGGGCACCTGAGCACTGTGAGCGCTGTGTCTCCTGCCCACACGCACCACACGGCTCGCCTCTGTGCCCCTTCACCCTCAGCCTTAAAACTGGCCAGTGTCGCCAGCAGTCTGGACCGGGTACCCAAAGTCACCCCCACTAGTGCCATCGACATTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007485-'22-14,'22-13,23-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.838 C2=0.853
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(20.1=95.1)
A:
PF067527=E_Pc_C=FE(18.6=100)
C2:
PF067527=E_Pc_C=FE(48.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCAGCAGAACTCCACAG
R:
TTAAGGCTGAGGGTGAAGGGG
Band lengths:
257-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]