BtaEX6009917 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018581 | EPC2
Description
Bos taurus enhancer of polycomb homolog 2 (Drosophila) (EPC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192242]
Coordinates
chr2:47526363-47529312:-
Coord C1 exon
chr2:47529176-47529312
Coord A exon
chr2:47527622-47527781
Coord C2 exon
chr2:47526363-47526696
Length
160 bp
Sequences
Splice sites
3' ss Seq
TAACTCTGTTTCTCTTATAGGGC
3' ss Score
11.39
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TGTCAGGGGGCATCACGGAAGAGCAGTTTCAGACTCATCAACAGCAGTTAGTTCAAATGCAAAGGCAGCAGCTTGCTCAGCTTCAGCAGAAACAGCAATCTCAGCATTCCTCGCAACAGACACATCCAAAAGCACAG
Seq A exon
GGCTCAAGCACCTCTGACTGTATGTCTAAAACACTTGACTCAGCCAGCGCCCATTTTGCTGCATCTGCAGTGGTCAGTGCACCTGTTCCAAGTCGCAGTGAGGTAGCCAAGGAACAGAACACTGGCCACAGCAACATAAACGGTGTTGTCCAGCCTTCAG
Seq C2 exon
GAACCTCTAAAACATTATACTCCACCAATATGGCTTTATCATCCAGCCCAGGGATTTCAGCTGTACAACTTGTAAGGACAGTTGGCCACACCACTACAAACCACTTAATCCCAGCATTGTGCACAAGCAGTCCTCAAACACTTCCCATGAACAATTCCTGCCTGACAAATGCAGTGCACCTCAATAACGTCAGTGTTGTTTCTCCAGTCAATGTGCATATCAATACACGGACTTCAGCACCATCGCCAACAGCCTTAAAACTTGCCACAGTTGCTGCCAGTATGGACAGAGTGCCAAAGGTTACTCCTAGCAGTGCCATCAGCAGCATAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018581-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.778 C2=0.536
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(18.2=91.3)
A:
PF067527=E_Pc_C=FE(22.9=100)
C2:
PF067527=E_Pc_C=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTTCAGCAGAAACAGCA
R:
TGAGGTGCACTGCATTTGTCA
Band lengths:
244-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]