MmuEX6101131 @ mm9
Exon Skipping
Gene
ENSMUSG00000069495 | Epc2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278321]
Coordinates
chr2:49401229-49404284:+
Coord C1 exon
chr2:49401229-49401365
Coord A exon
chr2:49402966-49403125
Coord C2 exon
chr2:49403951-49404284
Length
160 bp
Sequences
Splice sites
3' ss Seq
TGCTGCTATCCGTTTTTTAGGGC
3' ss Score
10.19
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
TAACAGGGGGCATCACAGAAGAGCAGTTTCAGACACATCAACAGCAGCTAGTTCAAATGCAAAGGCAGCAACTTGCGCAGCTTCATCAGAAACAACAATCCCAGCATTCCTCACAGCAGACACATCCAAAAGCACAG
Seq A exon
GGCTCAAGCACCTCTGACTGTATGTCTAAAACACTTGACTCAGCCAGCGCCCACTTTGCTGCATCTGCAGTGGTCAGTGCTCCTGTTCCAAGTCGCAGTGAGGGATCCAAGGAACAGAACACTGGCCACAACAATATGAATGGTGTTGTCCAGCCTTCAG
Seq C2 exon
GACCCTCTAAAACATTATATTCCACCAATATGGCTTTATCATCCAGCCCAGGGATTTCAGCTGTACAGCTTGTAAGGACAGTTGGCCACACTACTACAAACCACTTGATCCCAGCGTTGTGCACAAGCAGTCCTCAGACACTTCCCATGAACAATTCCTGCCTGACCAATGCAGTGCACCTCAATAACGTCAGTGTTGTTTCTCCTGTCAATGTGCATATCAATACACGGACTTCAGCACCATCGCCAACAGCCTTAAAACTTGCCACAGTTGCTGCCAGCATGGACAGAGTGCCAAAGGTTACTCCCAGCAGTGCCATCAGCAGCATAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069495-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.833 C2=0.607
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(18.2=91.3)
A:
PF067527=E_Pc_C=FE(22.9=100)
C2:
PF067527=E_Pc_C=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATCACAGAAGAGCAGTT
R:
CGCTGGGATCAAGTGGTTTGT
Band lengths:
246-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: