GgaEX1022656 @ galGal3
Exon Skipping
Gene
ENSGALG00000012453 | EPC2
Description
NA
Coordinates
chr7:36387146-36390737:+
Coord C1 exon
chr7:36387146-36387285
Coord A exon
chr7:36388534-36388693
Coord C2 exon
chr7:36390404-36390737
Length
160 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTTTTATTCCCCCAGGGC
3' ss Score
11.58
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
TAGTAACAGGGGGTATCACAGAAGAACAATTTCAGACACATCAACAGCAGTTAGTTCAAATGCAGAGGCAACAACTTGCCCAGCTTCAACAGAAACAACAATCTCAGCATTCCTCGCAACAGACACATCCAAAAGCACAG
Seq A exon
GGCTCCAGCATCTCTGACTGTATGTCAAAAACACTTGATTCAGCCAGTGCCCACTTTGCTGCATCCGCAGTGGTCAGTGCACCTGCTCCTGGTCGCAGTGAGGCAACGAAGGAGCAAACCCCCAGCCACAACAACATTAATGGTGTTGTCCAGCCTTCAG
Seq C2 exon
GAACCTCTAGAACGTTGTACTCCACCAACATGGCTTTATCATCCAGCCCAGGGATTTCAGCTGTACAGCTTGTAAGGACAGTTGGCCACACCACCACAAACCACTTAATTCCAGCGTTGTGCACGAGCAGCCCTCAAACACTTCCCATGAACAATTCTTGCCTGACGAACGCAGTGCACCTCAACAATGTCAGTGTTGTTTCTCCAGTCAATGTGCATATTAATACAAGGACTTCAGCACCATCGCCAACAGCCTTAAAACTTGCCACAGTTGCTGCCAGTATGGACAGAGTGCCAAAGGTAACTCCTAGCAGTGCCATCAGCAGTATAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012453-'14-20,'14-19,15-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.872 A=0.796 C2=0.562
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(18.2=89.4)
A:
PF067527=E_Pc_C=FE(22.9=100)
C2:
PF067527=E_Pc_C=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTTGCCCAGCTTCAACA
R:
TGCGTTCGTCAGGCAAGAATT
Band lengths:
243-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]