HsaEX0022717 @ hg19
Exon Skipping
Gene
ENSG00000135999 | EPC2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:24543]
Coordinates
chr2:149539213-149542570:+
Coord C1 exon
chr2:149539213-149539349
Coord A exon
chr2:149541166-149541325
Coord C2 exon
chr2:149542237-149542570
Length
160 bp
Sequences
Splice sites
3' ss Seq
TAACTTTGTTCATTTTATAGGGC
3' ss Score
8.51
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
TAACAGGGGGTATCACAGAAGAGCAGTTTCAGACACATCAGCAGCAGTTAGTTCAGATGCAAAGGCAGCAACTTGCCCAGCTTCAGCAGAAACAGCAATCTCAGCATTCCTCGCAACAGACACATCCAAAAGCACAG
Seq A exon
GGCTCAAGCACCTCTGACTGTATGTCTAAAACACTTGACTCAGCCAGCGCCCACTTTGCTGCATCTGCAGTGGTCAGTGCACCTGTTCCAAGTCGCAGTGAGGTAGCCAAGGAACAGAACACTGGCCACAACAACATAAACGGTGTTGTCCAGCCTTCAG
Seq C2 exon
GAACCTCTAAAACATTATACTCCACCAATATGGCTTTATCATCCAGCCCAGGGATTTCAGCTGTACAGCTTGTAAGGACAGTTGGCCACACCACTACAAACCACTTAATCCCAGCATTGTGCACAAGCAGTCCTCAGACACTTCCCATGAACAATTCCTGCCTGACAAATGCAGTGCACCTCAATAATGTCAGTGTTGTTTCTCCAGTCAATGTGCATATCAATACACGGACTTCAGCACCATCGCCAACAGCCTTAAAACTTGCCACAGTTGCTGCCAGTATGGACAGAGTGCCAAAGGTTACTCCCAGCAGTGCCATCAGCAGCATAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135999-'19-20,'19-19,20-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.815 C2=0.536
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(18.2=91.3)
A:
PF067527=E_Pc_C=FE(22.9=100)
C2:
PF067527=E_Pc_C=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCCAGCTTCAGCAGAAA
R:
CACTGCATTTGTCAGGCAGGA
Band lengths:
242-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)