GgaEX1022656 @ galGal4
Exon Skipping
Gene
ENSGALG00000012453 | EPC2
Description
enhancer of polycomb homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:24543]
Coordinates
chr7:34259337-34262925:+
Coord C1 exon
chr7:34259337-34259473
Coord A exon
chr7:34260722-34260881
Coord C2 exon
chr7:34262592-34262925
Length
160 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTTTTATTCCCCCAGGGC
3' ss Score
11.58
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
TAACAGGGGGTATCACAGAAGAACAATTTCAGACACATCAACAGCAGTTAGTTCAAATGCAGAGGCAACAACTTGCCCAGCTTCAACAGAAACAACAATCTCAGCATTCCTCGCAACAGACACATCCAAAAGCACAG
Seq A exon
GGCTCCAGCATCTCTGACTGTATGTCAAAAACACTTGATTCAGCCAGTGCCCACTTTGCTGCATCCGCAGTGGTCAGTGCACCTGCTCCTGGTCGCAGTGAGGCAACGAAGGAGCAAACCCCCAGCCACAACAACATTAATGGTGTTGTCCAGCCTTCAG
Seq C2 exon
GAACCTCTAGAACGTTGTACTCCACCAACATGGCTTTATCATCCAGCCCAGGGATTTCAGCTGTACAGCTTGTAAGGACAGTTGGCCACACCACCACAAACCACTTAATTCCAGCGTTGTGCACGAGCAGCCCTCAAACACTTCCCATGAACAATTCTTGCCTGACGAACGCAGTGCACCTCAACAATGTCAGTGTTGTTTCTCCAGTCAATGTGCATATTAATACAAGGACTTCAGCACCATCGCCAACAGCCTTAAAACTTGCCACAGTTGCTGCCAGTATGGACAGAGTGCCAAAGGTAACTCCTAGCAGTGCCATCAGCAGTATAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012453-'26-23,'26-22,27-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.796 C2=0.562
Domain overlap (PFAM):
C1:
PF067527=E_Pc_C=PU(18.2=91.3)
A:
PF067527=E_Pc_C=FE(22.9=100)
C2:
PF067527=E_Pc_C=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTTGCCCAGCTTCAACA
R:
TGCGTTCGTCAGGCAAGAATT
Band lengths:
243-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]