DreEX0031419 @ danRer10
Exon Skipping
Gene
ENSDARG00000023484 | fam101a
Description
family with sequence similarity 101, member A [Source:ZFIN;Acc:ZDB-GENE-030616-80]
Coordinates
chr8:43335205-43356803:+
Coord C1 exon
chr8:43335205-43335553
Coord A exon
chr8:43353285-43353394
Coord C2 exon
chr8:43356422-43356803
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGTTATGTTTCTGTGTGTAGCTC
3' ss Score
8.83
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GCTTCTGAAGGAAACAACAGGTCTCCCTGTGTGGCTTTGTTATGGGACTTTAACTTTAAACACATCTTGCATCGTCTTTCTTCTTGGAGTGAATTTGGCTAGTTTAAAAAATTATAATTGCGCTCTTCCAGAAATGGTGGGGCATTTACATTTGCAAGCTATGGATGACAGTTTGAAAGGAAAGAACCGAGAGGGACTGCTCGATAGTCCGGATTCGGGACTCCCTCCAAGCCCCAGTCCACCCTTCTACTCTCTGTCGCCGGGGATTCTCGAGTCGCGGTCCGCCAGCTGCTCAACCCCGACCGAGCTGCAAGGATACTGCAGAAAGGAGAGCCGGGAAGGCAAACTG
Seq A exon
CTCCCATACTTGCTCCTAAACTCTCAAGGTCCAGATGCTAAGTCACGCATGTACCCTGTGTTCTATGGAGAGAGCATCGAGGTCAACCCCAAACCTGAAAAAGAGATCAA
Seq C2 exon
GTTCAACTCTGCAGTCAAGTATGCTTCAGACAGACACTTTCGTGACCAGGTTTACTGCGCCCTGGTCCCAACCCCCACATCCTTCAGTGAGACGATAGTGGCCGTCCAGAACTGCACATGGCGCAGCTACAAGTCAGAGGTTCACTTCCAGCCCCGCCACAGGCCTCTACACTTCCAGAGCACGGCCATCGTGTTCCCCAAACACACCCGGAACACTTACCGCACCACGCTGAACTACAACAGCAACAGAAACGCTGCCGGCCGGCGGTGGTTTGTGTCCACAGTCAGACTGGAGTCCACCGAAGACGCCAGTCCATGCATCATTTACACAGAAGACCTCTGAGGTGTTCCCCAAAATCAATAAACTCCCTTTGGTTAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023484-'4-2,'4-1,5-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.027 C2=0.044
Domain overlap (PFAM):
C1:
PF150681=FAM101=PU(33.8=98.6)
A:
PF150681=FAM101=FE(17.1=100)
C2:
PF150681=FAM101=PD(48.1=87.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCGATAGTCCGGATTCG
R:
TCACTGAAGGATGTGGGGGTT
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]