RnoEX6064238 @ rn6
Exon Skipping
Gene
ENSRNOG00000001011 | Rflna
Description
refilin A [Source:RGD Symbol;Acc:1588777]
Coordinates
chr12:37038733-37047628:-
Coord C1 exon
chr12:37047334-37047628
Coord A exon
chr12:37040692-37040801
Coord C2 exon
chr12:37038733-37039936
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCTGTCATTTCTCCTCCTAGGCC
3' ss Score
11.04
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GGAGGCTTTTGCTTCGGGAGCGGGTCCCAGCTGGAGCCGCAGGCCGGAGCCTCCTTGTCTCTCCTCTGGCCCAGTGGTGGCGGGAACACGAGCTGCTGGGGCCCGCGCCCAGCGCCCGCCAGTCATGGTGGGTCACCTGCATCTGCAGGGCATGGGGGACACGCGGGAGCAGAGCCGCGACGGCTTGCTGGACAGTCCCGACTCAGGACTGCCCCCCAGTCCCAGTCCTAGCCCTCCCTTCTATGCCCTGTCGCCGGGCACCTTGGACACCCGTGCCACCACTGAAGTTCCAGCG
Seq A exon
GCCACTTCCCTCTTCCCAAATCCCCCAGCCCTGGAGATGAGGTCCCGGCTGCTGCCTGTGTTCTTTGGGGAGAGCATCGAGGTGGACCCAGAACCCGCACACGAAATCCG
Seq C2 exon
CTGCAACTCCGAGGTCACCTACGCCTCAGAGAGATACTTCCGCGACAAGATCTTCTACGCTCCGGTGCCCACGGTCACAGCCTACAGCGAGACCATAGTAGCGGCGCCCAACTGTACTTGGAGGAGCTACCGCAGTCAGCTGACCCTGGAGCCTCGCCCTCGGGCCCTGCGCTTCGGAAGCACCGCCATCATCTTCCCCAAACTGGCCCGAAGCTCCTTCCGCACCACGCTGCACTGTAGCCTAGGCCAGCCGCGGCACTGGTACTCCTCCAGCCTGCAGCTGCGACGGTGTGGGGATCCCGCACCCAGTTCTGGCTGCCCCGATGTACTCTGAGGCGCCCAGTGGCAGAGGAGGAGCCGAGTGTGGGAGGGAGTCAGGAAAGAGGGTCAGGCGACCCCACAGGTTAGGCTGGCTGTGCCCGAGCCTAGAGGATTCTGTGAATGAATCTTTCATTAGTCTTTACAGACTTGATGGCCTTAGGGGCAGGGCCCAGCATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001011-'1-1,'1-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.930 A=0.216 C2=0.018
Domain overlap (PFAM):
C1:
PF150681=FAM101=PU(29.2=98.2)
A:
PF150681=FAM101=FE(18.8=100)
C2:
PF150681=FAM101=PD(51.0=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACAGTCCCGACTCAGG
R:
CTGCGGTAGCTCCTCCAAGTA
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]