MmuEX6021108 @ mm10
Exon Skipping
Gene
ENSMUSG00000037962 | Rflna
Description
refilin A [Source:MGI Symbol;Acc:MGI:1920371]
Coordinates
chr5:125003448-125012547:+
Coord C1 exon
chr5:125003448-125003738
Coord A exon
chr5:125010372-125010481
Coord C2 exon
chr5:125011272-125012547
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCTGCCATGTCTCCTCCTAGGCT
3' ss Score
9.26
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GCATTTGCATCAGGAGCGGGTCTCAGCTGGAGCCACAGGCCGGAGCCTCCTTGTTGCTCCTCTGGCTCAGTGGTGGCGGGGACCCGAGCTGCTGGGGCCCACGCCCCGCGCCCGCCAGTCATGGTGGGTCACCTGCATCTGCAGGCCATGGGGGACACGCGGGAGCAGAGCCGCGACGGCTTGCTGGACAGTCCCGATTCAGGACTGCCCCCCAGTCCCAGTCCTAGCCCGCCCTTCTACGCCCTGTCGCCAGGCACCCTGGACACCCGGACCACCACTGAAGCTCCAGCG
Seq A exon
GCTCCTTCCCTCTTCCAAACTCCCCCAGCTCTGGAGATGAGGTCACGGTTGCTGCCTGTGTTCTTTGGGGAGAGCATCGAGGTGGACCCAGAACCCGCACATGAAATCCG
Seq C2 exon
CTGCAACTCTGAGATCACCTACGCCTCAGAGAGATACTTCCGAGACAAGATCTTCTACGCTCCAGTGCCCACGGTCACGGCCTACAGTGAGACCATAGTGGCGGCGCCCAACTGCACCTGGCGGAGCTACCGCAGCCAGCTGACCCTGGAGCCTCGCCCACGGGCCCTGCGGTTCGGGAGCACCGCCATCATCTTCCCCAAACTGGCCCGCAGCTCCTTCCGCACCACCCTGCACTGCAGCCTCGGCCAGCCTCGGCACTGGTACTCCTCCAGCCTGCAGCTGCGGCGGTGCGGGGACCCTACGCCCGGTCCCAGCTGTCCTGATGTACTCTGAGGAGTCCAGTCTCTGAGGAGGACCTGAGTGTGGGAGAGGTTCAGGAAAGATGGCCCGGCTACCACCACAGGTTAGGCTGGCTGTGCCGGAGCTCCAGCCTAGAGGAGTCTGTGAATGCATCTTTCATTAGCCTTTAGAGGCTCTATGGCCTTAAGGGCAGGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037962-'1-8,'1-6,3-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=0.243 C2=0.027
Domain overlap (PFAM):
C1:
PF150681=FAM101=PU(29.2=98.2)
A:
PF150681=FAM101=FE(18.8=100)
C2:
PF150681=FAM101=PD(51.0=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTGGCTCAGTGGTGG
R:
GCGTAGGTGATCTCAGAGTTGC
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types