HsaEX6069989 @ hg19
Exon Skipping
Gene
ENSG00000178882 | FAM101A
Description
family with sequence similarity 101, member A [Source:HGNC Symbol;Acc:27051]
Coordinates
chr12:124773710-124798870:+
Coord C1 exon
chr12:124773710-124773916
Coord A exon
chr12:124796364-124796473
Coord C2 exon
chr12:124798738-124798870
Length
110 bp
Sequences
Splice sites
3' ss Seq
GTCCCTGGCTCTCCCCACAGCCC
3' ss Score
11.3
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
ACACTCAGTCTCTGATTTTATCCCTGCCCTGGCTTAATTAAGTGCTCTGAAGACATAAATAGGTTTTTTGTTTACTCAAGCTTGGGAGAAGCTGGCAGAAAAGGCCTTTTCAGCTAAAAGCTCCTTACAGCCGGAAGGTGTGAAGCGGCAAGTTTCCAGCCGGGAAGAAGCCTCTCAGCCGTAGGCGTCTTTGCCCGGAGCTGTGAG
Seq A exon
CCCCCCTCCCAACTCCCAAATCCCCCGGCGTCGGAGATGAGGCCCCGGATGCTGCCAGTGTTCTTTGGGGAGAGCATCAAGGTGAACCCGGAACCCACGCATGAGATCCG
Seq C2 exon
CTGCAACTCTGAGGTCAAGTACGCCTCGGAGAAGCATTTCCAGGACAAGGTCTTCTATGCGCCCGTACCCACCGTCACGGCCTACAGCGAGACCATCGTGGCAGCACCCAACTGCACGTGGCGCAACTACCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178882-'0-2,'0-1,2-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.287 C2=0.022
Domain overlap (PFAM):
C1:
NA
A:
PF150681=FAM101=PU(19.5=96.0)
C2:
PF150681=FAM101=PD(79.7=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTTTATCCCTGCCCTGGC
R:
GGCGCATAGAAGACCTTGTCC
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)