GgaEX0004076 @ galGal3
Exon Skipping
Gene
ENSGALG00000003137 | FAM101A
Description
NA
Coordinates
chr15:4772894-4788645:-
Coord C1 exon
chr15:4788097-4788645
Coord A exon
chr15:4779336-4779445
Coord C2 exon
chr15:4772894-4777789
Length
110 bp
Sequences
Splice sites
3' ss Seq
AGCACTGTTCCTCCCTGCAGATG
3' ss Score
11.77
5' ss Seq
TAGGTACAG
5' ss Score
4.67
Exon sequences
Seq C1 exon
TGGAACAGCGCGTGGAGCAGCGCGTGGCTCGCGCTGCCGCTCCCCGCCCAGCGCTCTCTGCCGGCGGGGCCGCCGCATTTTCTCCGCTCCCCGTCCCTTCTGACGGGCGCGGCGCCGGGTGAGGGGCAGCAGCGCAGCGCAGCGCGGCCGATGCCGGCTCTCCCCGCCCCGCTCGGCTCGGCGCGGGCTGCGGCAGGCCGGTGGCGGCCATCGGGAATCGGAGCCCCCCCGGGCGCCCTTCCCCTCCCGTCCCTCCGCAGCCGGAGGGTTTTCTCCCGCTGCGGCCGCCTCGCTGCCCCCCAGACATGGTAGGGCACCTCCAGCTGCAAGGGATGGACGAGAGCCTGAAGGAGAAGAGCCGGGAAGGCTTGCTGGACAGCCCGGACTCGGGGCTGCCCCCCAGCCCCAGCCCCCCTTTCTACTCCCTCTCGCCCGGGGGCGGCGGCGGCGCGGACCCCTCGGCCTCGGGGCAGCGGCGAGAGGCCAAGGACGGCAGAGGG
Seq A exon
ATGCCTTACCTGCTCCTGAACCCGTCCGTGTTGGAGATAAGACCTCGAATGTACCCTGTGTTTTTTGGAGAAAGCATTGAGGTCAACCCCGAGCCCATGCAGGAAATTAG
Seq C2 exon
GTGTAATTCCGAGGTGAAGTATGACTCTGAGAAGCATTACAGGGATGACATTATCTACGGCCCCATCCCCACTGTCACCACCTACAGTGAGACAGTCATTGCTGCGCCCAATTGCACCTGGCGGAACTACAAGTCCCAGCTGATCTTCGAGCCCCGCCAGAAGCCACTGAGGTTTCAGAGCACGACCATCATTTTTCCTAAGCGTGCCAAGAACATTTACCGGACCACCCTCAACTACAGCTTGGGCTGTGCCAAGCGCTGGTTTTCTTCCAGCGTGCAGCTGGAACTCTGTGAGGAAACCAGCCCATGCGTCATCTACAGTGAGACCCTCTGATCCGCCCTGCCGCTGGCAACCTTGTGACCTCAAGGAGGCTATGGCCTTTACTGGGTCTCTAGCTGGGCCCTCATTGATGACGACTGAATATTAATGGCTGGAGAAGATGTCATCTTGGGCGAGGCTGAACTGGCTGGGAGGAGGCTTGCAGGGCATGGGATGGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003137_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.054 C2=0.023
Domain overlap (PFAM):
C1:
PF150681=FAM101=PU(32.0=98.5)
A:
PF150681=FAM101=FE(18.7=100)
C2:
PF150681=FAM101=PD(50.8=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGAGAGCCTGAAGGAGAA
R:
TAGGTGGTGACAGTGGGGATG
Band lengths:
250-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]