DreEX0031951 @ danRer10
Exon Skipping
Gene
ENSDARG00000020596 | fam73a
Description
family with sequence similarity 73, member A [Source:ZFIN;Acc:ZDB-GENE-041010-193]
Coordinates
chr2:8865103-8871234:-
Coord C1 exon
chr2:8871181-8871234
Coord A exon
chr2:8868121-8868237
Coord C2 exon
chr2:8865103-8865868
Length
117 bp
Sequences
Splice sites
3' ss Seq
TATTTGATTTGTGTGCACAGGTC
3' ss Score
8.38
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GCAGTTGCATCAAGTTGTTGGTCTGTTCTGAAGCAGAAGAGACAGCATATAAAG
Seq A exon
GTCCAAGATGGCTTTATTGCACATTTCTATGCAGTGTGTGAGCACATAAGTCCTGTCTTGGCCTGGGGGTTTCTAGGCCCTAAATGTACTCTGCAAGATTTCTGCTGCTTCTTCAAG
Seq C2 exon
GAGCAGGTGTTGTTCTTCCTTAAGGACATCTTTGACCTCGACAAAGTACGTTATTTTAGTCTGGAGACACTGGCTGAAGACATCCTACACCTGCTTCACAGACGATCTGATCTGCTTATGGCCTATCTGGCAACAGATGTGATCCATCACCTGAACGGCTGTAGTGACACCTCGGTGCATCTGGTACACAGTGCTTTGCTGGAAGCACAAGTTCAGTGACTACATACGTCTGTCAGTCATTCACTCACTGCCTACAGCTGCTGAATCTAGTCCTCATCACGACTCGTCTTCCAAGAGTCACTATTAGTGCCATGTACTGTTTGTATGTTCAAAATTAAGTGGTTAAGAAAGGACAGATGTCTATTTAATATGCCTTTCAGTGTTCTTTTATCCAAGTTTCTGTTTTGACTTGAGGAATGATTTGCACAATGAATGGTCTAATCTTTTAGGGTTCTCCATGTTTTGAAACCTAAAAGTTGTAACCATATTGGAGAGTATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020596-'17-28,'17-25,18-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(3.1=100)
A:
PF102654=DUF2217=FE(7.0=100)
C2:
PF102654=DUF2217=PD(7.8=57.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGCATCAAGTTGTTGGT
R:
CCAGCAAAGCACTGTGTACCA
Band lengths:
256-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]