MmuEX0018459 @ mm9
Exon Skipping
Gene
ENSMUSG00000054942 | Fam73a
Description
family with sequence similarity 73, member A [Source:MGI Symbol;Acc:MGI:1924567]
Coordinates
chr3:151936423-151946799:-
Coord C1 exon
chr3:151946746-151946799
Coord A exon
chr3:151941857-151941973
Coord C2 exon
chr3:151936423-151939817
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGCGTTTTGTTTCCCAACAGATC
3' ss Score
12.44
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCTGTGGCTTCAAGTTGTTGGTCAGTGCTGAAACAGAAAAGGCAACAGATGAAG
Seq A exon
ATCTCAGATGGATTTTTCGCTCATTTTTATGCCATTTGTGAGCATGTCAGCCCTGTTTTAGCCTGGGGCTTCTTGGGTCCTAGAAATTCTCTCTATGACTTATGTTGCTTCTTTAAG
Seq C2 exon
AATCAAGTTCTTTTCTTTCTCAAAGACATCTTCGACTTTGAGAAGGTGCGCTATTCGAGCATAGACACGCTGGCGGAGGACCTCACGCACCTACTCATCCGCCGCACGGAGCTGCTGGTCACCTGTCTTGGTGCAGATGCCCTGAGGCACGCCACCACTTGCACGAGTGGACACTCCCACGCCGTGCCCACTGCGCTCTTAGAAGCCAAAGTACAATAAGGACCAGAAGTGGCTGGAGAATGCTGTCCAGTGCTCTAGGGTAACCCCTGACTGTGAGTGCCTCAGAGTCTACAGGGCTGACAGCGTGGCCTCAGGGAGAGGACAGTCTCAAGGATGGGCGGGGATTGTCCTGCACGTATGCAGGAGGTTTGTCGCTGAAGCCATGCGATGGATCCAGAGAGACTTTTTAATAATCCTTAGGTAATAATTTAAGTTGTGAAGTGATGCGTATTATGTTGTGACTGTCGCTTGAATTGAAGCCAGTGCTCTAGGAGTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054942_MULTIEX1-8/8=7-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(8.1=100)
A:
PF102654=DUF2217=FE(18.1=100)
C2:
PF102654=DUF2217=PD(20.0=57.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAAGTTGTTGGTCAGTGC
R:
TTGGCTTCTAAGAGCGCAGTG
Band lengths:
257-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: