HsaEX0024616 @ hg19
Exon Skipping
Gene
ENSG00000180488 | FAM73A
Description
family with sequence similarity 73, member A [Source:HGNC Symbol;Acc:24741]
Coordinates
chr1:78332023-78344106:+
Coord C1 exon
chr1:78332023-78332076
Coord A exon
chr1:78338689-78338805
Coord C2 exon
chr1:78340531-78344106
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTACTTCCCAGCAGATC
3' ss Score
8.77
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCTGTGGCTTCAAGTTGTTGGTCGGTGCTGAAACAGAAAAGACAACAGATGAAG
Seq A exon
ATCCCAGATGGATTTTTTGCCCATTTTTATGCCATTTGTGAACACATCAGTCCTGTCCTAGCCTGGGGCTTTTTGGGTCCTAGAAATTCTCTGTATGATTTATGTTGCTTTTTTAAG
Seq C2 exon
AATCAAGTTCTTTTATTTCTCAAAGACATTTTTGACTTTGAGAAGGTGCGCTATTCAAGTACAGAGACTTTAGCTGAAGACCTCATGCAGTTACTCATTCGCCGCACTGAGCTTTTAATGGCCTATCTTGAAGCAGATGCCCTGAGGCATACAAGTAGTTGTCTAAGCAGTCATGGTCATGTTATGTCCACTGGGCTACTGGAAGCCAAAGTACAATAAGTACCATAAGAATCATACAATTTGAGTGTGCTATGAAATATTTTAAGGTAACTATTGATTTTGTAACATATATTACAAAGTTAACAGAATTGATGCATGTGGATTCAGGGAGGAAAAAAAAATCTACTAAAAAATGAGCAACTGTACTGTATTTATACAGAAGTTCTGTCATTGAATTCCTGTGTAGTGTAGTCATAGTGGCTTTTTGCATTCATTAGGTAATAATTGAAGTCATGAAATGTATATTTTACAGAAATATCGCTTGAATTGAAGCCAATATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180488_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(3.1=100)
A:
PF102654=DUF2217=FE(7.0=100)
C2:
PF102654=DUF2217=PD(7.7=57.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGTTGTTGGTCGGTGCT
R:
GCCCAGTGGACATAACATGACC
Band lengths:
242-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)