GgaEX0013110 @ galGal3
Exon Skipping
Gene
ENSGALG00000008951 | FAM73A
Description
NA
Coordinates
chr8:19646680-19648698:-
Coord C1 exon
chr8:19648645-19648698
Coord A exon
chr8:19647268-19647384
Coord C2 exon
chr8:19646680-19646898
Length
117 bp
Sequences
Splice sites
3' ss Seq
TCCCATTTTTACATCCCCAGGTA
3' ss Score
9.87
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
GCTGTGGCTTCAAGCTGTTGGTCAGTACTAAAGCAGAAAAGACAACAAATGAAG
Seq A exon
GTACCTGATGGATTTTTTGCTCATTTCTATGCTATATGTGAACATATCAGCCCTGTTTTGGCATGGGGTTTTTTGGGTCCTAGAAATTCCCTTTATGACTTATGCTGCTTCTTCAAG
Seq C2 exon
GATCAAGTGCTTTTCTTCCTCAAAGACATCTTTGACTTTGAAAAGGTACGATACTCAACTATGGAGAGTTTGGCTGAAGACCTTATGCAATTATTAATCCGACGCACTGAACTTTTGATGGCCTATCTTGGAGCAGATTCACTGAGACATGCCAGTGCTTGTGTAAGTGGTCATGGGCATGTGATGACCAGTGGGCTCTTAGAAGCAAAGGTACAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008951-'12-15,'12-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(3.1=100)
A:
PF102654=DUF2217=FE(6.9=100)
C2:
PF102654=DUF2217=PD(7.7=57.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCAAGCTGTTGGTCAG
R:
GAGCCCACTGGTCATCACATG
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]