RnoEX0054542 @ rn6
Exon Skipping
Gene
ENSRNOG00000056332 | Miga1
Description
mitoguardin 1 [Source:RGD Symbol;Acc:1559958]
Coordinates
chr2:257493875-257501844:-
Coord C1 exon
chr2:257501710-257501844
Coord A exon
chr2:257495548-257495664
Coord C2 exon
chr2:257493875-257494093
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTTGTTTCCCAGCAGATC
3' ss Score
10.19
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGAAAAACCTAAATTTCTATGACGTGGTTCTGGATTTTATATTGATGGACTCCTTTGAAGATTTAGAAAACCCGCCAACATCCATACAGAGTGTAGTGACCAACCACTGGCTCAGTGCCTCCTTCAAAGAAACC
Seq A exon
ATCTCAGATGGATTCTTCGCCCATTTTTACGCCATTTGTGAGCATATAAGCCCTGTCTTAGCCTGGGGCTTCTTGGGTCCTAGAAATTCTCTCTATGACTTATGTTGCTTCTTTAAG
Seq C2 exon
AATCAAGTTCTTTTCTTTCTCAAAGACATCTTTGACTTTGAGAAGGTGCGCTATTCGAGCATAGACACGCTGGCGGAGGACCTCACACACTTACTCATCCGCCGCACGGAACTGCTGGTCACCTGTCTTGGTGCAGATGCCCTGAGGCAGGCCACTACTTGTACCAGTGGACACTCCCATGCCGTGCCCACTGCGCTGTTAGAAGCCAGAGTACAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056332_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(21.0=100)
A:
PF102654=DUF2217=FE(18.1=100)
C2:
PF102654=DUF2217=PD(20.0=57.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCCAACATCCATACAGAG
R:
TGGGAGTGTCCACTGGTACAA
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]