DreEX0032149 @ danRer10
Exon Skipping
Gene
ENSDARG00000056128 | fastkd1
Description
FAST kinase domains 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1833]
Coordinates
chr9:48560815-48564909:+
Coord C1 exon
chr9:48560815-48560946
Coord A exon
chr9:48563594-48563707
Coord C2 exon
chr9:48564765-48564909
Length
114 bp
Sequences
Splice sites
3' ss Seq
TAATTTCTCTCACATTGTAGCCA
3' ss Score
6.7
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
CCTTTCCAGAGTCTCAGAACCTGTACATCCGTCTCCGCCTCATGCAGCTGAACCGCGCCGTGTGTCTGGAGTGTCCAGAGTTTCATGTGCCATGGTTTCATGAGCGTTACTGTCAACAGCTGCAGAAGAGAG
Seq A exon
CCAACAGCTCCATCAGCCCAATCCAGCAGCAGATCCATAAGATTCTTGGTGAAGTCCTGGGAGGAATCAACTGTGCCAAAGCAGCAGTGGTGACTCCGTATTACTATACTGTCG
Seq C2 exon
ATTTTGAGCTTGTTCTGGATCGTCATCTGCACCCGCTGCCGTACAGTGAGCCGACTCGACTGCAGATCAGCGGCGGTGGGAAAGGTCACTGGCAGTCTGGATCAGCAGAGAAGGAGAGGACAGAGCTGCCGCCCGGTGCGCGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056128_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.347
Domain overlap (PFAM):
C1:
PF083687=FAST_2=PU(40.9=80.0)
A:
PF083687=FAST_2=FE(43.2=100)
C2:
PF083687=FAST_2=PD(14.8=26.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTGTACATCCGTCTCCG
R:
GCAGCTCTGTCCTCTCCTTCT
Band lengths:
245-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]