MmuEX6101966 @ mm9
Exon Skipping
Gene
ENSMUSG00000027086 | Fastkd1
Description
FAST kinase domains 1 [Source:MGI Symbol;Acc:MGI:2444596]
Coordinates
chr2:69529292-69532704:-
Coord C1 exon
chr2:69532573-69532704
Coord A exon
chr2:69531926-69532039
Coord C2 exon
chr2:69529292-69529421
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCAATTTTCCTAAGACA
3' ss Score
5.44
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
TTTTACCTTCAAGTCTGAGTGCAAGGATCCAGTTCCGCCTCATGGAGTTAAATAGAGCAGTCTGCTTGGAGTGCCCCGAGCTGCAGGTTCCATGGTTTCATGACCGCTTTTGTCAGCGACAGTTTAACAAAG
Seq A exon
ACACTGGTGTTATGAACGGAGCCCAACAACAGATCTATAAAATGTTAGCAGAGGTCCTGGGAGGACACCAATGTGTGAAGCCTTCCGCTCTTTCACCGTATTACCACACAGTGG
Seq C2 exon
GTTTTGAATGCATTTTGGATAAACGAAAAAAACCTCTGCCTTATGAAAGCCATAGCATAGCTCCCAGAAAATCCCTGGGCATGCACTGGGATTCAAGAGTTGAGCCAAGGCTTCCACCAGAAGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027086-'15-12,'15-11,16-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083687=FAST_2=PU(40.9=80.0)
A:
PF083687=FAST_2=FE(43.2=100)
C2:
PF083687=FAST_2=PD(14.8=29.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCAAGTCTGAGTGCAAGG
R:
GGAAGCCTTGGCTCAACTCTT
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: