GgaEX6042405 @ galGal3
Exon Skipping
Gene
ENSGALG00000009841 | FASTKD1
Description
NA
Coordinates
chr7:20117541-20119229:+
Coord C1 exon
chr7:20117541-20117672
Coord A exon
chr7:20118679-20118792
Coord C2 exon
chr7:20119088-20119229
Length
114 bp
Sequences
Splice sites
3' ss Seq
TCTTTATTTTGTCTTTGTAGGCA
3' ss Score
10.52
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
TCCTGTCTGATACCTTAAGGCAGAGGGTCCGCTCACGGCTTATGAAACTGAACAGAGCAGTCTGTCTGGAATGTCCGGAGTTTCACATCCCTTGGTTTCATGAGCAGTATTTCCAGCGTGTCTTGTGTAAAG
Seq A exon
GCATTCGCCGAATAAATCCGCTGCGACAGCATGTTCACAGGATGCTGGCAGAGATCTTAGGAGGGAGCCATTATGCAAGAGTGTCTGTTCTCACACCGTACTACTATGAAATAG
Seq C2 exon
ATTTTGAATGCATTCTGGATAAAAATAAAAAGCCTCTTTCTTACACGGCTCAGAATATACTTCTGGATGATTTGAGGGGAGTACATTTGAGACATGACATCAAGGATGAAGAGAGAAAGGCATTGCCGCAAGGGGCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009841-'14-12,'14-11,16-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083687=FAST_2=PU(40.9=80.0)
A:
PF083687=FAST_2=FE(43.2=100)
C2:
PF083687=FAST_2=PD(14.8=27.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTTAAGGCAGAGGGTCCG
R:
GGCAATGCCTTTCTCTCTTCA
Band lengths:
249-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]