HsaEX0024947 @ hg19
Exon Skipping
Gene
ENSG00000138399 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:26150]
Coordinates
chr2:170387862-170394651:-
Coord C1 exon
chr2:170394523-170394651
Coord A exon
chr2:170393737-170393850
Coord C2 exon
chr2:170387862-170388000
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTATTTATTTTTTTATAAAGGTA
3' ss Score
7.98
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
TTTTATCTCCATCTCGAAGTGCAAGAGTCCAGTTTCATCTTATGGAGTTAAATAGATCAGTCTGCTTGGAATGCCCTGAGTTTCAGATTCCATGGTTTCATGACCGCTTCTGTCAACAATATAATAAAG
Seq A exon
GTATTGGTGGCATGGATGGAACACAACAGCAGATTTTTAAAATGTTAGCAGAGGTACTAGGAGGAATCAATTGTGTAAAAGCCTCGGTTCTTACGCCTTATTACCACAAAGTAG
Seq C2 exon
ATTTTGAGTGTATCTTGGATAAAAGAAAAAAACCTCTTCCGTATGGAAGCCATAATATAGCATTGGGACAACTACCAGAAATGCCCTGGGAATCAAATATCGAAATAGTTGGATCAAGGCTGCCACCAGGGGCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138399_MULTIEX1-3/3=2-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083687=FAST_2=PU(40.2=79.5)
A:
PF083687=FAST_2=FE(43.7=100)
C2:
PF083687=FAST_2=PD(14.9=27.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAAGTGCAAGAGTCCAGT
R:
GTGGCAGCCTTGATCCAACTA
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)