RnoEX6017313 @ rn6
Exon Skipping
Gene
ENSRNOG00000024335 | Fastkd1
Description
FAST kinase domains 1 [Source:RGD Symbol;Acc:1563531]
Coordinates
chr3:55930202-55934089:-
Coord C1 exon
chr3:55933958-55934089
Coord A exon
chr3:55933344-55933457
Coord C2 exon
chr3:55930202-55930340
Length
114 bp
Sequences
Splice sites
3' ss Seq
TTTTTATAATTTTTCCTAAGATA
3' ss Score
6.02
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TTTTACCTTCAAGTCTCAGTGCAAGGATCCAGTTCCGCCTTATGGAGTTAAATAGAGCCGTCTGCTTGGAGTGCCCCGAGCTGCAGGTCCCGTGGTTTCATGACCGCTTTTGTCAGCGACAGTTTAACAAAG
Seq A exon
ATACCGGTGTTATGAATGGAGCGCAACAACAGATCTATAAAATGTTAGCAGAGGTCCTGGGAGGACACCGATATGTAAAGCCTTCGACTCTTTCACCATATTACCACACAGTGG
Seq C2 exon
ATTTTGAATGCATTTTGGATAAACGAAAAAAGCCCCTGCCTTATGAAAGCCACAGCGTAACTCCGGGAAAATCCCCAGGAGTACACGGGGATTCAAATACTTCAAGAGCTGAGCCAAGGCTTCCACCAGAAGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024335-'18-18,'18-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.553
Domain overlap (PFAM):
C1:
PF083687=FAST_2=PU(40.9=80.0)
A:
PF083687=FAST_2=FE(43.2=100)
C2:
PF083687=FAST_2=PD(14.8=27.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCAAGGATCCAGTTCCG
R:
CTTCTGGTGGAAGCCTTGGC
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]