DreEX0032778 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34315483-34321141:+
Coord C1 exon
chr7:34315483-34315654
Coord A exon
chr7:34318769-34318873
Coord C2 exon
chr7:34321049-34321141
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTGGTCATTCACTAGGGG
3' ss Score
5.33
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
AGGTGACCCGCACAGCCTCTCCTCAGCTGTCAGACTCCTCAAGTTCTCCTGCTCCTGGCAGTCCTGTGTTGACCAGTCCCTCCTCAACCACCTCTGGCTCCCGAACTCCACCTCTGGCTCTGGTGACTAATGGAGCAGAGTCTGCTGCCGTCCCACAGCAACAACACAACCT
Seq A exon
GGGGCGCTCTTTTATGAGTCAGTACATAGCTCACATGGGGATTTCTAGACGGCGGTTAAAAAAGGAGAGGTCAATAACAGAGGAAAACTCAAGCATCTTCAGCAG
Seq C2 exon
AGCGTCTTTCTCAGAAACGGATTCTGCTCCGGAGACTCCAACTCAGACGACAGCAGATCAGCCCAGCCGGACAGTGGGAAAGAGAGTCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.989 C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCCTCAGCTGTCAGACT
R:
ACTCTCTTTCCCACTGTCCGG
Band lengths:
244-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]