Special

MmuEX6037920 @ mm10

Exon Skipping

Gene
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:105334687-105336796:-
Coord C1 exon
chr8:105336639-105336796
Coord A exon
chr8:105336382-105336561
Coord C2 exon
chr8:105334687-105334802
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTAACAGGCCCCGCCTCTAGCTC
3' ss Score
4.46
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGTGCCCTTCGGTTAGAGGATGGAGATATGGAAGAGGCTGCAGCCGCCGCTGCTGCAGGTGGCCGGCGAGAGCGGCGGAAGCCATCCTCGGAGGAGGGCAAAAGGAGCCGAAGATCACTAGAAGGTGGAGGCTGCCCTGTGCGTGCCCCAGAACCTGG
Seq A exon
CTCTACAGGCTCCGCCTCACCAGTAGGCTCCACCCCCTCCACTGGCTCCGCCCCGCCTACAAATCCAGCCTTCAGCTCTACTGGCCCAGCCTCTGGCCTTCTTCGAACCTCAGTGAACCTCTTTCCTACCATTTCCGTGGGGCCGTCAGTGGACAGTTCCTGTGAGAGAAGCGTCTACAA
Seq C2 exon
AGCCCGGTTCCTGGAGAATGTGGCGGCAGCAGAGACGGAGAAGCAGGCTGCTCTGGCCCAAGGCCGAGCGGAGACGCTGGCTGGAGCCACGGTAGATGACACTGATGGATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'15-23,'15-18,17-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.849 A=0.874 C2=0.941
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
ALTERNATIVE
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTCGGTTAGAGGATGGA
R:
TGTCATCTACCGTGGCTCCAG
Band lengths:
256-436
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types