RnoEX0035990 @ rn6
Exon Skipping
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37290427-37292396:-
Coord C1 exon
chr19:37292239-37292396
Coord A exon
chr19:37291986-37292162
Coord C2 exon
chr19:37290427-37290542
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTAACAGGCCCTGCCTCTAGCCC
3' ss Score
4.81
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGCGCCCTTCGGTTAGAGGATGGAGATATGGAAGAGGCTGCAGCTGCTGCAGCTGCAGGTGGCCGACGAGAGCGACGGAAGCCATCCTCAGAGGAGGGCAAAAGGAGCCGAAGATCACTAGAAGGTGGAGGCTGTCCTGTGCGTACCCCAGAACCTGG
Seq A exon
CCCAACAGGCTCTGCCTCTCCAGTAGGCTCCGCCTCCTTCACTGACTCCACCTCGCCTACAAGTTCGGCCTTCAGCCCTACTGGCCCAGCCTCTGGTCTTCATACCTCAGTGAACCTCTTTCCTACCATTTCTGTGGGGCCCTCAGTGGACACTTCCTGTGAGAGAAGTGTCTACAA
Seq C2 exon
AGCCCGGTTTCTGGAGAATGTGGCAGCAGCAGAGACAGAGAAGCAGGCTGCTCTGGCCCAAGGCCGAGCAGAGACGCTGGCAGGGGCAACAGTGGATGAGACAGATGAGTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625-'11-27,'11-19,12-27
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.849 A=0.912 C2=0.925
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGATATGGAAGAGGCTGCA
R:
CTGTCTCATCCACTGTTGCCC
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]