MmuEX6037920 @ mm9
Exon Skipping
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:107858587-107860696:-
Coord C1 exon
chr8:107860539-107860696
Coord A exon
chr8:107860282-107860461
Coord C2 exon
chr8:107858587-107858702
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTAACAGGCCCCGCCTCTAGCTC
3' ss Score
4.46
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGTGCCCTTCGGTTAGAGGATGGAGATATGGAAGAGGCTGCAGCCGCCGCTGCTGCAGGTGGCCGGCGAGAGCGGCGGAAGCCATCCTCGGAGGAGGGCAAAAGGAGCCGAAGATCACTAGAAGGTGGAGGCTGCCCTGTGCGTGCCCCAGAACCTGG
Seq A exon
CTCTACAGGCTCCGCCTCACCAGTAGGCTCCACCCCCTCCACTGGCTCCGCCCCGCCTACAAATCCAGCCTTCAGCTCTACTGGCCCAGCCTCTGGCCTTCTTCGAACCTCAGTGAACCTCTTTCCTACCATTTCCGTGGGGCCGTCAGTGGACAGTTCCTGTGAGAGAAGCGTCTACAA
Seq C2 exon
AGCCCGGTTCCTGGAGAATGTGGCGGCAGCAGAGACGGAGAAGCAGGCTGCTCTGGCCCAAGGCCGAGCGGAGACGCTGGCTGGAGCCACGGTAGATGACACTGATGGATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-'11-13,'11-11,13-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.849 A=0.844 C2=0.911
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(16.8=34.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTCGGTTAGAGGATGGA
R:
TGTCATCTACCGTGGCTCCAG
Band lengths:
256-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: