BtaEX0014628 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34982535-34983121:-
Coord C1 exon
chr18:34982988-34983121
Coord A exon
chr18:34982691-34982906
Coord C2 exon
chr18:34982535-34982558
Length
216 bp
Sequences
Splice sites
3' ss Seq
CTGACAGGCCACACCTCCAGCTC
3' ss Score
1.78
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AACGCCCTGCGGTTGGAGGATGGAGACCTCGAAGAAGCCGTCACAGGTGGGCGGCGCACCACCCGCCGAAAACCTTCCTCAGAGGAGGGCAAGAGGAGCCGCCGATCTCTAGAAGTGCGCTCCCCAGAGCCTGG
Seq A exon
CTCCACAGGCCCCGCCTCTCCGGTCGTCTCCACCTCCGCTGCCAGCCCGGTCCTGCCAACCAGCCCCACCTCCTGCCCCGTAGGCCCCGCCTCACCTCCAAGCCCCGCCTCCAGCCCCGTGGGCCCTGCCTCTGGCCTCCATAGCACCTTGAGACTCTTTCCTAGCGTCTCCGTGGCGCCCTCATCCGACAGCTCCTGTGAAAGGAGCGTCTACAA
Seq C2 exon
ACTTCACCAAACTGCTCCTGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427_MULTIEX1-3/15=2-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.844 A=0.863 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000063472fB2784

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGTTGGAGGATGGAGA
R:
ACAGGAGCAGTTTGGTGAAGT
Band lengths:
149-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development