DreEX6006121 @ danRer10
Exon Skipping
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34318769-34326407:+
Coord C1 exon
chr7:34318769-34318873
Coord A exon
chr7:34321049-34321141
Coord C2 exon
chr7:34326271-34326407
Length
93 bp
Sequences
Splice sites
3' ss Seq
GACTAACTGTGTCTCCGCAGAGC
3' ss Score
10.74
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGGGCGCTCTTTTATGAGTCAGTACATAGCTCACATGGGGATTTCTAGACGGCGGTTAAAAAAGGAGAGGTCAATAACAGAGGAAAACTCAAGCATCTTCAGCAG
Seq A exon
AGCGTCTTTCTCAGAAACGGATTCTGCTCCGGAGACTCCAACTCAGACGACAGCAGATCAGCCCAGCCGGACAGTGGGAAAGAGAGTCTTCAA
Seq C2 exon
AGACACGTTTTTGCGTTCTCTGGCTGTATCCGAGTGGGAGAAAACGAAGAAGTCGTCCGCCTTACAAGAGAAACCGAGTGAGAGTGAGGCACCCACTGAGACTGAGGAGCAGATCTCCCTCTCCACCACCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768-'12-17,'12-14,13-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.989 A=0.963 C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCGCTCTTTTATGAGTCA
R:
TCTCTTGTAAGGCGGACGACT
Band lengths:
176-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]