DreEX0035810 @ danRer10
Exon Skipping
Gene
ENSDARG00000090804 | gpr155a
Description
G protein-coupled receptor 155a [Source:ZFIN;Acc:ZDB-GENE-100922-89]
Coordinates
chr9:2492944-2496167:+
Coord C1 exon
chr9:2492944-2493034
Coord A exon
chr9:2495122-2495323
Coord C2 exon
chr9:2496081-2496167
Length
202 bp
Sequences
Splice sites
3' ss Seq
GTTTACTGCTGGTTTTATAGGTG
3' ss Score
7.84
5' ss Seq
CGGGTATGA
5' ss Score
7.63
Exon sequences
Seq C1 exon
TTTGCCTTTTTTGGCTGTGAGCGTCCTTCTCCTGTCAGGACACAGAATGCCAGACACCATCGACTCTGCCTTCTTTTATGGAACCACACAG
Seq A exon
GTGATGTGCACATCGGTGGTGTTGTGTGTGAGTATCGCGGTGTGTGGCGTCTCTCTCGCGCTGCTCAGCAGACGAACACAAGACTATCAAAACCTTGTATCTGGATCATTGTCCGGCAGTGAAGAAGATTTGAGGATTCCCTACAACGCACCAGTTCAGGGCTCCATTGAGGATACCTGCACTTTAGGCAGCACCAACACGG
Seq C2 exon
CATGCCAGATGTGCGAGTGTGCGTGCGCTCTTCCTCAGACCAGACCTGATGTTACAAACACCAAAGAGGAAGTGTCCATACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090804-'10-11,'10-10,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGGCTGTGAGCGTCCTT
R:
GTATGGACACTTCCTCTTTGGTGT
Band lengths:
165-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]