HsaEX6016796 @ hg19
Exon Skipping
Gene
ENSG00000163328 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:22951]
Coordinates
chr2:175318465-175326220:-
Coord C1 exon
chr2:175326130-175326220
Coord A exon
chr2:175324606-175324816
Coord C2 exon
chr2:175318465-175318569
Length
211 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTCATGTCGGCAGATG
3' ss Score
9.62
5' ss Seq
CAAGTATGA
5' ss Score
4.72
Exon sequences
Seq C1 exon
AATTCCTGCTCTCCTTGTTGGTGTTCTTTTGATAACTGGAAAACACAATGGAGATAGCATTGACTCAGCCTTCTTTTATGGAAAAGAACAG
Seq A exon
ATGATCACCACAGCAGTCACCCTGTTCTGCAGCATCCTGATAGCTGGCATATCCCTCATGTGCATGAACCAGACTGCCCAAGCAGGAAGCTATGAAGGTTTCGATCAGTCTCAGAGCCACAAAGTGGTGGAGCCTGGAAATACTGCTTTTGAGGAGAGTCCAGCACCAGTAAATGAACCAGAACTTTTTACAAGCTCTATTCCAGAAACAA
Seq C2 exon
GTTGCTGCTCCTGCTCCATGGGAAATGGTGAATTACACTGCCCATCAATAGAGCCAATAGCAAACACAAGCACCAGTGAGCCTGTGATTCCTTCGTTTGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163328-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.155 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCCTGCTCTCCTTGTTGGTG
R:
TTTTCTCAAACGAAGGAATCACAGG
Band lengths:
196-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)