DreEX0035817 @ danRer10
Exon Skipping
Gene
ENSDARG00000071086 | gpr155b
Description
G protein-coupled receptor 155b [Source:ZFIN;Acc:ZDB-GENE-110815-2]
Coordinates
chr6:10525723-10528813:-
Coord C1 exon
chr6:10528723-10528813
Coord A exon
chr6:10528441-10528642
Coord C2 exon
chr6:10525723-10525794
Length
202 bp
Sequences
Splice sites
3' ss Seq
TGTCTATCTCACCCAATCAGATT
3' ss Score
7.33
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
AATTCCTTTTCTGACTGTGGGCGGGCTGCTTATGATCGGACAAAGAATGAGTGACAGCTTAGACCCCGCCTTCTTTTATGGCAGTGGGCAG
Seq A exon
ATTGTGTCCACCGTGGTGGTTTTAGGCTTCAGTATTGTGCTGGGTGGTCTGTCTCTGATGGGATTGAGTCGGGGGGCTCAGGAGGAGCAGAGTTATCAGGCCTTAGATCAAAACTCCATCACAGGTGCATCAGAAAATTCCAGACACCTCCAGACAGAGAACCAGAATTCTTCTGATGTGGATCAAACACACACAAACACAG
Seq C2 exon
ATGTTTGTTGCAGTGAACCCATGCCAGATATGATAGCCGGGCATCTGAACGACTCACCAGTGCCTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071086-'10-13,'10-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.368 C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTTTTCTGACTGTGGGCG
R:
GAAGGCACTGGTGAGTCGTTC
Band lengths:
156-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]