GgaEX0020948 @ galGal3
Exon Skipping
Gene
ENSGALG00000014209 | GPR155
Description
NA
Coordinates
chr7:18090360-18092511:+
Coord C1 exon
chr7:18090360-18090450
Coord A exon
chr7:18091649-18091898
Coord C2 exon
chr7:18092410-18092511
Length
250 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTTTTACTTAACAGATA
3' ss Score
10.11
5' ss Seq
GAGGTATAG
5' ss Score
7.13
Exon sequences
Seq C1 exon
AGTCCCAACGCTTCTGGTGGGAATCTTGTTAATAGTTGGTGAACGTAACAGCACTACCATTGACTCTGCCTTTTTCTATGGAAAACATCAG
Seq A exon
ATAATCACCACAGCAGTGGTCCTGTTCATCAGCATATTGATGTCAGGCATCTCACTTATGTGCATGAACAGAAATAGACAAGAGTCAAACTATGAGGTACTGAACCCATATTCACCTCATGGCCAAGTGGAAGGGAATGAGGGGAATCAAGTTTCAGCCACTGTGCCTCAACCTTCTGCAGGGTCTTCTGCGCAACCTTCTCCCGCACAACCTTCTGCAGGTTGTTCTGCACAGCTGTCTGCAGAAAGAG
Seq C2 exon
GTTGCTGTTCTTGTCAAGCAGCAAATGAGGAAATATCCTGTGCTAAGGACGGCAAAGCAGTGCCAAATGCTGCTGAAAACAAGGTTCCTTCAATTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209-'14-14,'14-12,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.257 C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGCTTCTGGTGGGAATCT
R:
CTGTCTCAATTGAAGGAACCTTGT
Band lengths:
188-438
Functional annotations
There are 0 annotated functions for this event