RnoEX0039619 @ rn6
Exon Skipping
Gene
ENSRNOG00000018485 | Gpr155
Description
G protein-coupled receptor 155 [Source:RGD Symbol;Acc:1309162]
Coordinates
chr3:60065891-60082286:-
Coord C1 exon
chr3:60082196-60082286
Coord A exon
chr3:60079563-60079773
Coord C2 exon
chr3:60065891-60065995
Length
211 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCTGATGCTGGCAGATG
3' ss Score
7.82
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AATCCCTGCTCTCCTCGTGGGCGTGCTTCTGATAACTGGAAAACACAATGGAGACAGCGTTGACTCGGCTTTCTTTTATGGAAAAGAGCAG
Seq A exon
ATGATCACCACAGCAGTCACCCTGTTCTGCAGCATTCTCATAGCTGGGGTGTCACTCATGTGCATGAACCGTACCACCCAAGCTGGCCACTACGAAGGTTTCGGCCAGTCTCAGAGTCACAAACCGGTAGAGCCTGGAAGCACTGCGTTCGAGGAGAGCCCAGCGCCAACAAGTGAACCAGAGCTCTTCCCAAGTTCTATCCCAGAAACAG
Seq C2 exon
GTTGCTGTTCTTGCTCCTTGGGAAATGGTGAATTACGCTGTCCATCAATACAGCCAGGAACGAACTCAAGTGCTAGCAGGCCTAGGCCTTCTTCCTTTGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018485-'18-15,'18-14,19-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.394 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCCTGCTCTCCTCGTGG
R:
TTTTCTCAAAGGAAGAAGGCCT
Band lengths:
196-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]