BtaEX6008968 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021636 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:22377301-22382494:+
Coord C1 exon
chr2:22377301-22377391
Coord A exon
chr2:22378457-22378667
Coord C2 exon
chr2:22382390-22382494
Length
211 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGCAACATTGACAGATG
3' ss Score
6.28
5' ss Seq
CAAGTATGA
5' ss Score
4.72
Exon sequences
Seq C1 exon
GATTCCTGCTCTCCTTGTTGGTGTTCTTTTGGTAACTGGAAAACATAATGGAGAAAGCATTGACTCAGCCTTCTTTTATGGAAAAGAGCAG
Seq A exon
ATGATCATCACAGCAGTTACCCTGTTCTGCAGCATTGTGATAGCTGGCATATCACTCATGTGTATGAACCGCACCTCCCAAGCAGGACGCTATGAAGGTTTCGACCAGTCTCAGGACCGCAAAGCAGCAGAGCCAGGAAACACTGCTTTCGAGGACAGTCCAGTGCCAGTAAATGAACCCGAATCTTTTACAAGTTCTGTCCCAGAAACAA
Seq C2 exon
GTTGCTGCTCCTGCTCTATGGGAAATGGTGAATTATGCTGCCCATCCACGGAGCCAGTAGCAGACATAACCACCAGTGGGTCTGTGACTCCTTCATTTGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021636-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.324 C2=0.000
Domain overlap (PFAM):
C1:
PF152421=FAM53=PU(7.9=35.5)
A:
PF152421=FAM53=FE(50.4=100)
C2:
PF152421=FAM53=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCTGCTCTCCTTGTTGGT
R:
TTTTCTCAAATGAAGGAGTCACAGAC
Band lengths:
196-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]