DreEX0035818 @ danRer10
Exon Skipping
Gene
ENSDARG00000071086 | gpr155b
Description
G protein-coupled receptor 155b [Source:ZFIN;Acc:ZDB-GENE-110815-2]
Coordinates
chr6:10523744-10525794:-
Coord C1 exon
chr6:10525723-10525794
Coord A exon
chr6:10523926-10524029
Coord C2 exon
chr6:10523744-10523839
Length
104 bp
Sequences
Splice sites
3' ss Seq
AGAGAGTGTTTCTGTTGTAGGGA
3' ss Score
5
5' ss Seq
GCTGTATGT
5' ss Score
5.1
Exon sequences
Seq C1 exon
ATGTTTGTTGCAGTGAACCCATGCCAGATATGATAGCCGGGCATCTGAACGACTCACCAGTGCCTTCAGCAG
Seq A exon
GGATTGTCCTGGGCGAGTCATCAAGCTCTTTGCGTGTGCAGGAGGAGAGGCAAATTGCTCGACATGTGCTCCTCTGTCTGCTGCTCATCGTCAGCATGCTTGCT
Seq C2 exon
AACCTGTCCAGCTGCCTGTGGTGGTTGTTCAGTGCTGATCCAGGACGACTTTACCTCGAGCTGCAGTTTTTTTGCGCTGTAGCCAATTATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071086-'13-16,'13-15,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTTGCAGTGAACCCATGC
R:
TCCATAATTGGCTACAGCGCA
Band lengths:
162-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]