GgaEX6042263 @ galGal3
Exon Skipping
Gene
ENSGALG00000014209 | GPR155
Description
NA
Coordinates
chr7:18092410-18096320:+
Coord C1 exon
chr7:18092410-18092511
Coord A exon
chr7:18094905-18095038
Coord C2 exon
chr7:18096225-18096320
Length
134 bp
Sequences
Splice sites
3' ss Seq
ACTTCTGGTTTGTTTTTCAGCTG
3' ss Score
10.4
5' ss Seq
GCTGTAAAT
5' ss Score
-0.19
Exon sequences
Seq C1 exon
GTTGCTGTTCTTGTCAAGCAGCAAATGAGGAAATATCCTGTGCTAAGGACGGCAAAGCAGTGCCAAATGCTGCTGAAAACAAGGTTCCTTCAATTGAGACAG
Seq A exon
CTGATCAGTGTGTGAATCAGTGCAGTGCTCAGACCTGCGTACTGGCTCAGGAAGAACAGCTTCTACAGACTGGAGACAAACAGCTGGCCAGACATGTGCTGCTGTGCTTGCTTCTTGTTGTTGGCCTTTTTGCT
Seq C2 exon
AATCTTTCCAGTTGTTTATGGTGGCTGTTCAACCAAGAACCTGGAAGACTGTATGTGGAATTGCAGTTCTTTTGTGCTGTGTTTAATTTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209-'17-20,'17-18,20-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTCTTGTCAAGCAGCA
R:
TGACCAAAATTAAACACAGCACA
Band lengths:
195-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]