BtaEX6008966 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021636 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:22382390-22386441:+
Coord C1 exon
chr2:22382390-22382494
Coord A exon
chr2:22384722-22384858
Coord C2 exon
chr2:22386346-22386441
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTGTGCTTACTGTTTTATAGATG
3' ss Score
8.56
5' ss Seq
GCTGTAAAT
5' ss Score
-0.19
Exon sequences
Seq C1 exon
GTTGCTGCTCCTGCTCTATGGGAAATGGTGAATTATGCTGCCCATCCACGGAGCCAGTAGCAGACATAACCACCAGTGGGTCTGTGACTCCTTCATTTGAGAAAA
Seq A exon
ATGAACATTGTGTGAGTCGCTGTAACTCCCAGAGCTGCATATTAGCCCAGGAAGAGGAGCAGTATCTACACAGTGGAGACCAGCAACTGACTCGACATGTGTTGCTGTGTTTACTTCTCATTATTGGCCTGTTTGCT
Seq C2 exon
AATCTTTCCAGTTGTTTATGGTGGCTATTCAACCAAGAGCCTGGGAGACTATATGTTGAATTACAGTTTTTCTGTGCTGTGTTTAACTTTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021636-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF152421=FAM53=FE(25.2=100)
A:
PF152421=FAM53=PD(15.1=45.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCTGCTCCTGCTCTATGG
R:
GGCCAAAGTTAAACACAGCACA
Band lengths:
199-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]