MmuEX6102195 @ mm10
Exon Skipping
Gene
ENSMUSG00000041762 | Gpr155
Description
G protein-coupled receptor 155 [Source:MGI Symbol;Acc:MGI:1915776]
Coordinates
chr2:73351849-73356702:-
Coord C1 exon
chr2:73356598-73356702
Coord A exon
chr2:73353617-73353753
Coord C2 exon
chr2:73351849-73351944
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTCACTGTCTCGTAGCCG
3' ss Score
7.31
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTTGCTGTTCTTGCTCCTTGGGAAATGGTGAATTACGCTGCCCATCCATAGAGCCAGTAACGAACTCAAGTGCTAGTGGGCCTATGCCTTCTTCCTTTGAGAAAA
Seq A exon
CCGACCACTGTGTGAGCCGTTGTGACTCCCAGAGCTGCATCCTCGCCCAGGAAGAAGAGCAGTACCTGCAGAGCGGAGACCCACAGCTGACCCGGCACGTCCTGTTGTGCTTGCTGCTTATCATCGGCCTCTTTGCT
Seq C2 exon
AATCTCTCCAGCTGCCTGTGGTGGTTGTTCAACCACGAGACGGGACGGCTCTATGTTGAATTACAGTTTTTCTGTGCCGTGTTTAACTTTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041762-'22-22,'22-20,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGTTCTTGCTCCTTGGG
R:
GGCCAAAGTTAAACACGGCAC
Band lengths:
198-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types